PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016504401.1
Common NameWREBP-2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 371aa    MW: 42259 Da    PI: 6.7586
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016504401.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005279101323
                     ET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                     C+   Cgk+F +   L++H   H
  XP_016504401.1  79 CSydGCGKTFIDAGALRKHSHIH 101
                     78889**************7766 PP

2zf-C2H216.52.4e-05106130123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk F ++s LkrH   H
  XP_016504401.1 106 YVCHyeGCGKKFLDSSKLKRHFLIH 130
                     9********************8877 PP

3zf-C2H222.43.2e-07136160123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+Cp   Cgk Fs   nL++H++tH
  XP_016504401.1 136 YVCPheGCGKAFSLDFNLRSHMKTH 160
                     99**********************9 PP

4zf-C2H216.32.8e-05166191123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     + Cp   Cgk++ + + Lk+Hi + H
  XP_016504401.1 166 HICPypECGKRYAHEYKLKNHIASsH 191
                     679999****************9988 PP

5zf-C2H216.13.1e-05229254123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y+Cp   C+ks+ + + L+ H+r+ H
  XP_016504401.1 229 YSCPyeGCDKSYIHEYKLNLHLRNmH 254
                     99*********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-1372103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002877101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.78377106IPR007087Zinc finger, C2H2
PROSITE patternPS00028079101IPR007087Zinc finger, C2H2
SuperFamilySSF576672.26E-880130No hitNo description
Gene3DG3DSA:3.30.160.602.3E-14104126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.921106135IPR007087Zinc finger, C2H2
SMARTSM003550.0024106130IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280108130IPR007087Zinc finger, C2H2
SuperFamilySSF576673.83E-14117169No hitNo description
Gene3DG3DSA:3.30.160.602.0E-20127161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.882136165IPR007087Zinc finger, C2H2
SMARTSM003551.7E-4136160IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138160IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-7162189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.024166191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349166196IPR007087Zinc finger, C2H2
PROSITE patternPS000280168191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.1E-9223251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.57E-5223251No hitNo description
PROSITE profilePS5015711.344229259IPR007087Zinc finger, C2H2
SMARTSM003558.2E-4229254IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231254IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
METHMAHHLF ERRPIYKSKA PAAKWFKEWV PQDVVATGGK CYLLKWVNEA TLKALKEKPK  60
EPEVPVPEPE PTTEVLFLCS YDGCGKTFID AGALRKHSHI HGERQYVCHY EGCGKKFLDS  120
SKLKRHFLIH TGERDYVCPH EGCGKAFSLD FNLRSHMKTH SQENYHICPY PECGKRYAHE  180
YKLKNHIASS HQKNSTPDAP KYTPPVEKPM KTPKSSSAAY ASSSSDRPYS CPYEGCDKSY  240
IHEYKLNLHL RNMHPGHFPE DNAKNAQSTA DNDMDEGSDQ DAYAAKRGNG KIQKQSRPKP  300
SLKQPPLKVA RKSSSASPAN ISIAAKKPWP VKEENYNEED SEETEEERDD VGDGWRYGEN  360
DDDDEETEED E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C8e-34791898119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176940.0AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768399.10.0PREDICTED: uncharacterized zinc finger protein At4g06634
RefseqXP_016504401.10.0PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L31e-158Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLQ9ZQT80.0Q9ZQT8_TOBAC; WREBP-2 protein
STRINGPGSC0003DMT4000234590.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-138C2H2 family protein